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On the Compositional Generalization of Multimodal LLMs for Medical Imaging

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Table of Contents

2412.20070
Zhenyang Cai et el.
🤗 2024-12-31

↗ arXiv ↗ Hugging Face ↗ Papers with Code

TL;DR
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Many multimodal large language models (MLLMs) struggle with medical image analysis due to insufficient data and a lack of understanding of the relationships between different image features. This paper explores the concept of compositional generalization (CG) where models learn to combine fundamental elements (like image modality, anatomical area, and task) to understand novel combinations of images. This is a significant issue because models trained on existing datasets don’t easily transfer their knowledge to new, unseen medical images.

The researchers created Med-MAT, a large dataset of labeled medical images carefully categorized by modality, anatomy, and task. They evaluated various MLLMs on Med-MAT and found that those leveraging CG performed significantly better at classifying unseen images, especially when the training data was limited. This shows that understanding the relationships between different image features and leveraging them through CG is key to building better-generalizing models. This research also demonstrates that CG is effective across different MLLM backbones, increasing the applicability of the proposed method.

Key Takeaways
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Why does it matter?
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This paper is crucial because it introduces a novel framework, compositional generalization (CG), to enhance the generalization capabilities of multimodal large language models (MLLMs) in medical imaging. It addresses the limitations of existing MLLMs that struggle with limited data and highlights the importance of data selection strategies. This provides valuable insights for researchers and opens up new avenues for building more robust and efficient medical AI systems.


Visual Insights
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🔼 This figure illustrates the concept of compositional generalization (CG) using examples of medical images. The ‘Train’ column shows examples of images the model has been trained on, categorized by Modality (MRI or CT), Anatomical Area (brain or lung), and Task (cancer detection or not). The ‘Test’ column shows unseen combinations of these elements, such as a CT scan of a cat’s brain (combining CT Modality, brain anatomical area, and an unseen task). The idea is that if the model truly understands the elements, it should be able to generalize to unseen combinations of those elements. The success of the model in classifying the test images demonstrates the power of compositional generalization.

read the captionFigure 1: Examples of Compositional Generalization: The model is required to understand unseen images by recombining the fundamental elements it has learned.
Model02030708091113141516181921222325262830313233353637
Baseline22474025262728242224252349262524493049214920252319
Single-task Training24495068657683536132292657532824576489609754295149
Multi-task Training968980807997928876578874878693529872946110072756050

🔼 This table presents the accuracy results of three different models on an in-distribution dataset. The models are compared across 37 different subsets of the dataset. For each subset, the table shows the accuracy of a baseline model, a model trained with a single task, and a model trained with multiple tasks. The best score in each subset is highlighted in bold, and the second-best score is underlined. This demonstrates the impact of single-task versus multi-task training on model performance.

read the captionTable 1: Accuracy of different models on In-Distribution Dataset. Within each segment, bold highlights the best scores, and underlines indicate the second-best.

In-depth insights
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Med-MAT Dataset
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The Med-MAT dataset represents a significant contribution to the field of medical image analysis. Its structured organization around MAT-Triplets (Modality, Anatomical Area, Task) facilitates the exploration of compositional generalization (CG) in multimodal large language models (MLLMs). This structured approach allows researchers to investigate how MLLMs learn to combine knowledge from different sources and apply it to novel medical image scenarios. The dataset’s size and diversity—106 medical datasets, encompassing 11 modalities, 14 anatomical areas, and 13 medical tasks—make it a powerful tool for evaluating the generalization capabilities of MLLMs in the medical domain. The curated QA pairs, converted to visual question-answering format, streamline the training and evaluation process. Med-MAT’s publicly available nature promotes transparency and collaborative research. However, careful consideration of the datasets’ inherent biases and limitations is crucial for responsible use. Future research could explore additional modalities, incorporate temporal aspects, and enhance the dataset’s diversity further.

Compositional Gen
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The concept of “Compositional Generalization” in the context of multimodal large language models (MLLMs) applied to medical imaging is a significant contribution. It posits that the ability of MLLMs to understand novel combinations of medical images stems from their capacity to recombine learned fundamental elements. These elements, defined as the MAT-Triplet (Modality, Anatomical Area, and Task), provide a structured framework to analyze the model’s generalization capabilities. The research demonstrates that MLLMs leverage compositional generalization to understand unseen medical images, and that this is a key driver of generalization in multi-task training. This framework offers valuable insights into dataset selection for improving MLLM performance, particularly with limited data. Furthermore, the consistency of this compositional generalization across different MLLM backbones highlights its versatility and broad applicability. This research is crucial for advancing the use of MLLMs in medical applications where data scarcity is a major challenge. The proposed MAT-Triplet and the concept of compositional generalization significantly enhance our understanding of how MLLMs learn and generalize in the medical domain.

Multi-task Training
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Multi-task learning, in the context of the provided research paper, is a crucial technique for enhancing the generalization capabilities of multimodal large language models (MLLMs) applied to medical imaging. The paper highlights that training MLLMs on multiple tasks simultaneously, rather than focusing on single tasks, leads to superior performance on unseen datasets. This improvement stems from the models’ ability to leverage knowledge learned from related tasks to improve their understanding of novel combinations of modalities, anatomical areas, and tasks. The effectiveness of multi-task training is directly linked to the presence of compositional generalization (CG). The paper suggests that CG is a key driver of the generalization observed in multi-task settings, allowing the model to effectively recombine learned elements to understand unseen images. However, the study emphasizes that while multi-task learning generally enhances performance, a careful consideration of the relationships between tasks is vital for optimal results. Simply combining many unrelated tasks may not always lead to improvement; a structured approach which focuses on combinations leveraging CG is crucial for successful generalization.

Data Efficiency
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The research paper explores data efficiency in the context of compositional generalization (CG) for multimodal large language models (MLLMs) applied to medical imaging. A key finding is that CG significantly improves data efficiency, enabling MLLMs to generalize well even with limited training data for specific medical tasks. This is demonstrated through experiments showing that models trained with datasets exhibiting CG achieve higher accuracy on unseen data compared to models trained on randomly selected datasets. The study highlights the importance of carefully curating training datasets, emphasizing the selection of data that shares the same MAT-Triplet (Modality, Anatomical Area, Task) to leverage the power of CG. This approach is shown to be particularly effective for low-resource settings, where obtaining substantial amounts of data for each medical condition can be challenging. Furthermore, CG’s benefits are consistent across different MLLM architectures, suggesting that it represents a fundamental mechanism that enhances the models’ generalization capabilities. Therefore, leveraging CG appears to be a crucial strategy to improve data efficiency in training MLLMs for medical imaging tasks.

Future Directions
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Future research should prioritize expanding the Med-MAT dataset to encompass a wider range of medical modalities, anatomical areas, and tasks, improving its representativeness of real-world clinical scenarios. This would enhance the generalizability and robustness of the compositional generalization findings. Investigating the interplay between different types of medical data is crucial. For instance, exploring how combining data from imaging modalities with textual clinical notes or genomic data could further boost the performance of MLLMs. Furthermore, a more detailed analysis of the factors influencing the effectiveness of compositional generalization, such as data quality, volume, and task diversity, is warranted. This could involve systematically manipulating these factors in controlled experiments. Finally, exploring the integration of compositional generalization into existing clinical workflows is key to realizing the full potential of MLLMs in healthcare. This includes evaluating MLLM performance on complex real-world medical tasks and examining ways to address potential biases and ethical concerns related to the deployment of AI in medical settings.

More visual insights
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More on figures

🔼 This figure illustrates the creation of the Med-MAT dataset. It starts with 106 individual medical image datasets. These datasets are categorized and grouped based on their MAT-Triplet (Modality, Anatomical Area, and Task), resulting in 53 subsets. Each subset consists of various modalities, anatomical areas, and medical tasks. The QA pairs construction is shown, where image-label pairs are converted into question-answer pairs suitable for MLLM training. This process ensures each sample in Med-MAT is clearly defined by its MAT-Triplet, enabling research on compositional generalization.

read the captionFigure 2: The process of integrating a vast amount of labeled medical image data to create Med-MAT.

🔼 This figure illustrates the process of converting image-label pairs in Med-MAT into a visual question-answering (VQA) format suitable for training and evaluating multimodal large language models (MLLMs). The process involves assigning multiple instructions to each subset of images, converting each image-label pair into a single-choice question with four options, and randomly selecting distractor options from other labels within the subset. The integration of the ImageWikiQA dataset helps mitigate potential evaluation biases from varying option counts. The figure provides a detailed breakdown of the transformation from raw medical images and captions to structured questions and answers, which are essential for the MLLM training and testing.

read the captionFigure 3: The QA formatting process of Med-MAT.

🔼 Figure 4 presents a comparative analysis of the generalization performance of several multimodal large language models (MLLMs) on unseen medical image data. The models were trained using different strategies, and their accuracy on a target dataset is shown. Specifically, the figure displays results for models trained on all related datasets, all unrelated datasets, all related datasets excluding those that share a Modality, Anatomical Area, or Task with the target dataset (to disrupt compositional generalization, or CG), and models trained on all available datasets. The target data itself was excluded from training to assess genuine generalization ability. This visual comparison helps illustrate the impact of compositional generalization on the model’s capacity to generalize.

read the captionFigure 4: Accuracy results on the Target dataset for various models. ’All Related/Unrelated’ models are trained on all the related or unrelated datasets of the Target Data. ’w/o Modality/Area/Task’ are trained on All Related datasets but omit those sharing the same element as the Target Data, to intentionally disrupt CG. ’All Data’ uses all available training sets. (Note: The Target Data is excluded from training to observe generalization.)
More on tables
Model010405061012172024272934
Baseline322533334827331334373120
Multi-task Training392670315838614035415550

🔼 This table presents the accuracy of different models on an Out-of-Distribution (OOD) dataset. The OOD dataset consists of medical images not seen during the model’s training phase. The table compares the performance of a baseline model, a single-task training model, and a multi-task training model. Bold text highlights the best accuracy scores achieved for each task by any of the models, indicating which model performed best on each OOD dataset subset.

read the captionTable 2: Accuracy of different models on Out-Of-Distribution Dataset. Bold highlights the best scores.
Related CombinationTarget SubsetBaselineBaseline+Trained
Lung, COVIDBrain, CancerLung, Cancer2525
Lung, CancerBrain, StateLung, State4746
Brain, CancerLung, StateBrain, State3350
Bones, LevelLung, StateBones, State4953
Bones, LevelBrain, StateBones, State4953
Bones, LevelBreast, DiseasesBones, Diseases3733
Bones, LevelLung, DiseasesBones, Diseases3733
Bones, LevelChest, DiseasesBones, Diseases3731
Bones, StateBreast, DiseasesBones, Diseases3737
Bones, StateLung, DiseasesBones, Diseases3737
Bones, StateChest, DiseasesBones, Diseases3737
Lung, COVIDBreast, DiseasesLung, Diseases4948
Lung, COVIDBones, DiseasesLung, Diseases4948
Lung, COVIDChest, DiseasesLung, Diseases4948
CT, CancerX-ray, COVIDCT, COVID4746
CT, COVIDX-ray, DiseasesX-ray, COVID3021
CT, StateX-ray, DiseasesX-ray, State3021
CT, StateX-ray, CancerCT, Cancer3328
CT, Brain(State)X-ray, BonesX-ray, Brain4949
CT, BrainX-ray, LungX-ray, Brain4950
CT, Brain(Cancer)X-ray, BonesX-ray, Brain2551
CT, BrainX-ray, LungX-ray, Brain4952
X-ray, BrainCT, Lung(State)CT, Brain(State)3350
X-ray, LungCT, BrainCT, Lung(Cancer)2525
X-ray, LungCT, Brain(State)CT, Lung4750
X-ray, LungCT, Brain(Cancer)CT, Lung4750
CT, Lung (State)X-ray, BonesX-ray, Lung3032
CT, Lung (State)X-ray, BrainX-ray, Lung3032
CT, Lung (Cancer)X-ray, BonesX-ray, Lung3032
CT, Lung (Cancer)X-ray, BrainX-ray, Lung3032
Der, Skin, CancerFP, Fundus, DiseasesDer, Skin, Diseases2529
Der, Skin, CancerOCT, Retine, DiseasesDer, Skin, Diseases2529
Der, Skin, DiseasesDP, Mouth, CancerDer, Skin, Cancer4033
Der, Skin, DiseasesMic, Cell, CancerDer, Skin, Cancer4033
DP, Mouth, StateDer, Skin, CancerDP, Mouth, Cancer4850
DP, Mouth, StateMic, Cell, CancerDP, Mouth, Cancer4850
FP, Fundus, DiseasesMic, Cell, LevelFP, Fundus, Level3336
Mic, Cell, Cell IdentificationFP, Fundus, LevelMic, Cell, Level2333
Mic, Cell, Cell identificationDer, Skin, CancerMic, Cell, Cancer4950
Mic, Cell, Cell identificationDP, Mouth, CancerMic, Cell, Cancer4951
Mic, Cell, LevelDer, Skin, CancerMic, Cell, Cancer4951
Mic, Cell, LevelDP, Mouth, CancerMic, Cell, Cancer4951
Mic, Cell, CancerFP, Fundus, LevelMic, Cell, Level2324

🔼 Table 3 presents the results of a controlled experiment evaluating compositional generalization (CG) in a medical image classification task. The table shows the accuracy of a multimodal large language model (MLLM) on various target datasets (unseen during training). Each row represents a different target dataset and its associated training set. The ‘Related Combination’ column specifies the training set of datasets containing images with similar characteristics (same Modality, Anatomical Area, and Task). The ‘Target Subset’ column identifies the dataset tested. Three accuracy scores are provided: Baseline (no training), Baseline+ (trained on randomly selected unrelated datasets), and Trained (trained on the ‘Related Combination’ dataset). The green sections highlight successful generalization (accuracy improved by using related data), while red sections indicate unsuccessful generalization (no improvement or decrease in accuracy by using related data). The table is divided into four sections that represent different combinations of fixed elements (modality, area, or task) within the MAT-Triplet, allowing for analysis of how compositional generalization varies based on the combination of similar data.

read the captionTable 3: Generalization results on classification datasets: 'Related Combination' is the training set, 'Target Subset' is the goal. Baseline, Baseline+, and Trained represent the model’s accuracy without training, trained on randomly sampled unrelated data, and trained on related data, respectively. Green section indicates successful generalization, while red section denotes failure. The 4 segmented areas represent different Direction Types: fixed modality, fixed area, fixed task, and modality-area paired combinations.
Related CombinationTarget SubsetBaselineTrained
CT - Subset02Brain - Subset22Cancer - Subset07CT, Brain, Cancer
CT - Subset03Brain - Subset22Cancer - Subset21CT, Brain, Cancer
CT - Subset02Brain - Subset22State - Subset09CT, Brain, State
CT - Subset03Brain - Subset22State - Subset26CT, Brain, State
X-ray - Subset25Lung - Subset03Diseases - Subset02X-ray, Lung, Diseases
X-ray - Subset26Lung - Subset03Diseases - Subset02X-ray, Lung, Diseases
X-ray - Subset26Lung - Subset03Diseases - Subset08X-ray, Lung, Diseases
X-ray - Subset26Breast - Subset24Diseases - Subset02X-ray, Breast, Diseases
X-ray - Subset28Breast - Subset24Diseases - Subset08X-ray, Breast, Diseases

🔼 This table presents the results of a controlled experiment designed to investigate compositional generalization (CG) in multi-modal large language models (MLLMs). Three datasets were selected, each providing different combinations of MAT-Triplet elements (Modality, Anatomical area, and Task). The experiment tested whether the model could generalize to a target subset (a new combination of MAT-Triplet elements) by training only on related combinations of MAT-Triplet elements. The table shows the baseline performance (no training), and the accuracy of the model trained on related combinations. Green indicates successful generalization (the model correctly predicted the target task using only related training data), while red indicates failure.

read the captionTable 4: Generalization results from 3 datasets providing different elements of MAT-Triplet (RQ 3). 'Related Combination' is the training set, 'Target Subset' is the goal. Baseline, and Trained represent the model’s accuracy without training and trained on Related data, respectively. Green section indicates successful generalization, while red section denotes failure.
Related CombinationTarget SubsetTarget SubsetBaselineTrained
Lung, Lung DetBones, DiseasesLung, Diseases4952
Lung, Lung DetBreast, DiseasesLung, Diseases4954
Bones, Spinal Error DetBreast, DiseasesBones, Diseases2030
Bones, Spinal Error DetLung, DiseasesBones, Diseases2033
MRI, Diseases DetEnd, LevelEnd, Diseases2427
X-ray, Lung DetCT, COVIDX-ray, COVID2326
Der, Skin, Cancer DetFP, Fundus, DiseasesDer, Skin, Diseases2429
Mic, Cell, Cancer DetCT, Kidney, DiseasesMic, Cell, Diseases2426

🔼 Table 5 presents the results of using the NEXT-Chat model to assess compositional generalization (CG). The experiment focuses on whether training with a combination of detection and classification datasets improves the model’s ability to generalize to unseen classification tasks. The table shows different combinations of related datasets used for training (‘Related Combination’), the target dataset tested (‘Target Subset’), and the model’s accuracy with no training (‘Baseline’), and after training on related data (‘Trained’). The results are categorized into four ‘Direction Types’ based on how the related and target datasets were related: fixed modality, fixed area, fixed task, and paired modality-area combinations. Green highlights successful generalization, while red indicates failure. This helps understand how different relationships between training and target datasets impact generalization performance.

read the captionTable 5: Result of NEXT-Chat on CG by using detection and classification tasks to generalize classification Target dataset. Generalization results on classification datasets: 'Related Combination' is the training set, 'Target Subset' is the goal. Baseline and Trained represent the model’s accuracy without training and trained on related data, respectively. Green section indicates successful generalization, while red section denotes failure. The 4 segmented areas represent different Direction Types: fixed modality, fixed area, and modality-area paired combinations.
Related CombinationTarget SubsetTarget SubsetBaselineTrained
Lung, Lung DetBones, DiseasesLung, Diseases4147
Lung, Lung DetBreast, DiseasesLung, Diseases4149
Bones, Spinal Error DetBreast, DiseasesBones, Diseases3135
Bones, Spinal Error DetLung, DiseasesBones, Diseases3137
MRI, Diseases DetEnd, LevelEnd, Diseases2426
X-ray, Lung DetCT, COVIDX-ray, COVID2223
Der, Skin, Cancer DetFP, Fundus, DiseasesDer, Skin, Diseases2730
Mic, Cell, Cancer DetCT, Kidney, DiseasesMic, Cell, Diseases2024

🔼 This table presents the results of using MiniGPT-v2, a multimodal large language model, to perform a compositional generalization task. The model was trained on various combinations of datasets (‘Related Combination’) with a shared MAT-Triplet (Modality, Anatomical Area, Task) to predict the accuracy on a target dataset (‘Target Subset’) with unseen combinations of these elements. ‘Baseline’ represents the model’s accuracy without any training on related datasets, while ‘Trained’ reflects the accuracy after training with related datasets. The table highlights successful (‘Green’) and unsuccessful (‘Red’) generalization, categorized by three ‘Direction Types’ that reflect variations in dataset selection: fixed modality, fixed area, and modality-area paired combinations. This helps understand how the model’s ability to generalize depends on the relationships between the training and test data based on shared MAT-Triplets.

read the captionTable 6: Result of MiniGPT-v2 on CG by using detection and classification tasks to generalize classification Target dataset. Generalization results on classification datasets: 'Related Combination' is the training set, 'Target Subset' is the goal. Baseline and Trained represent the model’s accuracy without training and trained on related data, respectively. Green section indicates successful generalization, while red section denotes failure. The 3 segmented areas represent different Direction Types: fixed modality, fixed area, and modality-area paired combinations.
Related CombinationTarget SubsetBaselineTrained
Bones, StateBreast, DiseasesBones, Diseases61
Lung, COVIDBones, DiseasesLung, Diseases80
CT, COVIDX-ray, DiseasesX-ray, COVID35
CT, StateX-ray, DiseasesX-ray, State35
X-ray, LungCT, Brain(Cancer)CT, Lung32
X-ray, LungCT, BrainCT, Lung(Cancer)65
FP, Fundus, DiseasesMic, Cell, LevelFP, Fundus, Level48
Mic, Cell, Cell IdentificationFP, Fundus, LevelMic, Cell, Level34

🔼 Table 7 presents the results of using the Qwen2-VL model on a subset of classification datasets from the Med-MAT dataset. The table showcases the model’s performance in generalizing to unseen data based on training with related and unrelated data. Green highlights successful generalization, while red denotes failure. Each row represents a pair of related and target datasets, indicating which combinations successfully promote generalization to the target dataset.

read the captionTable 7: Result of Qwen2-VL on selected classification datasets in Med-MAT. Green section indicates successful generalization, while red section denotes failure.
Related CombinationTarget SubsetBaselineTrained
Bones, State, Breast, DiseasesBones, Diseases5259
Lung, COVID, Bones, DiseasesLung, Diseases6475
CT, COVID, X-ray, DiseasesX-ray, COVID3338
CT, State, X-ray, DiseasesX-ray, State3341
X-ray, Lung, CT, Brain(Cancer)CT, Lung3129
X-ray, Lung, CT, BrainCT, Lung(Cancer)4957
FP, Fundus, Diseases, Mic, Cell, LevelFP, Fundus, Level5561
Mic, Cell, Cell Identification, FP, Fundus, LevelMic, Cell, Level1032

🔼 Table 8 presents the results of using the Llama-3.2-Vision model on a subset of classification datasets from the Med-MAT dataset. The table shows the model’s performance on unseen data (‘Target Subset’) after being trained on related datasets (‘Related Combination’). The results are categorized to show successful generalization (green) or failure (red). The categories represent different types of relationships between the training and target datasets, based on fixed modalities, anatomical areas, tasks, or combinations of these factors.

read the captionTable 8: Result of Llama-3.2-Vision on selected classification datasets in Med-MAT. Green section indicates successful generalization, while red section denotes failure.
Subset No.ModalityAnatomical AreaTaskDatasets No.
01CoCervixCervical Picture Quality Evaluation1
02CTKidneyKidney Diseases Classification2
03CTLungCOVID-19 Classification3,4,6
04CTLungLung Cancer Classification5
05CTBrainBrain Hemorrhage Classification7
06CTBrainBrain Cancer Classification8
07DerSkinMelanoma Type Classification10
08DerSkinSkin Diseases Classification9, 11-15, 71, 72, 74
09DPMouthTeeth Condition Classification16
10DPMouthOral Cancer Classification17
11EndIntestineIntestine Cleanliness Level18
12EndBladderCancer Degree Classification19
13EndIntestineIntestine Diseases Classification20
14FPFundusEye Diseases Classification21-23, 26-28, 31, 32, 75
15FPFundusMultiple-labels Eye Diseases Classification24, 25, 68
16FPFundusBlindness Level29
17FPFundusRetinal Images Quality Evaluation30
18MicCellCell Type Classification33, 36-38, 39-41, 44, 65, 70
19MicCellProstate Cancer Degree Classification34
20MicCellMultiple-labels Blood Cell Classification35
21MicCellCancer Classification42, 67
22MRIBrainHead Diseases Classification44, 45
23OCTRetinaRetina Diseases Classification46, 47
24USBreastBreast Cancer Classification48
25X-rayBonesDegree Classification of Knee49, 53
26X-rayBonesFractured Classification50, 51
27X-rayBonesVertebrae Diseases Classification52
28X-rayLungCOVID-19 and Pneumonia Classification54-57, 60, 62, 81
29X-rayBreastBreast Diseases Classification58, 78
30X-rayLungTuberculosis Classification59, 79
31X-rayChestMultiple-labels Chest Classification61, 73, 76, 77, 80, 85, 87
32X-rayBrainTumor Classification63
33MicCellMulti-labels Diseases84
34FPFundusLevel Identification66
35X-rayBonesLevel Identification69
36X-rayBonesSpinal lesion Classification86
37X-rayBreastMulti-labels Diseases82
38DerSkinLesion Det/Seg88-91
39EndIntestinePolyP Det/Seg92-93
40EndIntestineSurgical Procedures Det/Seg94
41EndIntestineMulti-labels Det/Seg95
42MicCellCancer Cell Det/Seg96
43USChestCancer Det/Seg97
44USThyroidThyroid Nodule Region Det/Seg98
45MRIIntestineMulti-labels Det/Seg103
46MRILiverLiver Det/Seg104, 105
47X-rayLungLung Det/Seg99
48X-rayLungPneumothorax Det/Seg106
49X-rayBonesSpinal Anomaly Det100
50X-rayChestMulti-labels Det101, 102
51FPFundusVessel Seg107
52FPFundusOptic Disc and Cup Seg108

🔼 Table 9 details the composition of the Med-MAT dataset, showing how it’s divided into subsets. Each subset contains medical images categorized by three elements: Modality (e.g., CT scan, MRI), Anatomical Area (e.g., lung, brain), and Task (e.g., cancer detection, disease classification). The table lists each subset, specifying its modality, anatomical area, task, and the number of datasets included. It also uses color-coding to distinguish between classification and detection tasks within the subsets. Abbreviations for modalities (e.g., Co for Colposcopy, CT for Computed Tomography, etc.) are provided in the caption to aid understanding.

read the captionTable 9: The details of subset. In particular, Co stands for Colposcopy, CT represents Computed Tomography, DP refers to Digital Photography, FP is for Fundus Photography, MRI denotes Magnetic Resonance Imaging, OCT signifies Optical Coherence Tomography, Der refers to Dermoscopy, End stands for Endoscopy, Mic indicates Microscopy Images, and US represents Ultrasound. The blue section represents the classification dataset and the green section represents the detection
No.NameDescriptionCitation
1Intel & MobileODT Cervical ScreeningCervix Type in ScreeningBenO et al. (2017)
2CT Kindney DatasetNormal or Cyst or TumorIslam et al. (2022a)
3SARS-COV-2 Ct-ScanCOVID19, Classification DatasetSoares et al. (2020)
4COVID CT COVID-CTCOVID19, Classification Dataset.Zhao et al. (2020)
5Chest CT-ScanCancer ClassificationSunneYi (2021)
6COVID-19-CT SCAN IMAGESCOVID19, ClassificationwjXiaochuangw (2019)
7Head CTHead HemorrhageKitamura (2018)
8CT of BrainHead CancerData (2023)
9MED-NODEMelanoma or NaevusGiotis et al. (2015)
10ISIC 2020Melanoma, Benign or MalignantRotemberg et al. (2021)
11PED-UFES-20Skin Multi ClassificationPacheco et al. (2020)
12Web-scraped Skin ImageSkin Desease Multi ClassificationIslam et al. (2022b)
13ISBI 2016Skin Lesion ClassificationGutman et al. (2016)
14ISIC 2019Skin Desease Multi ClassificationCombalia et al. (2019)
15Skin Cancer ISICSkin Cancer Multi ClassificationKatanskiy (2019)
16Dental Condition DatasetTeeth condition classificationSajid (2024)
17Oral Cancer DatasetOral cancer ClassificationRASHID (2024)
18The Nerthus DatasetCleanliness levelPogorelov et al. (2017a)
19Endoscopic Bladder TissueCanser Degree ClassificationLazo et al. (2023)
20KvasirMulti Disease ClassificationPogorelov et al. (2017b)
21ACRIMAGlaucomaOvreiu et al. (2021)
22Augemnted ocular diseases AODMulti Classification of eye diseasesБақтыбекұлы (2021)
23JSIECMulti Classification of eye diseasesCen et al. (2021)
24Multi-Label Retinal DiseasesMulti Classification of eye diseasesRodrĂ­guez et al. (2022)
25RFMiD 2.0Multi Classification of eye diseasesPanchal et al. (2023)
26ToxoFundus(Data Processed Paper)Ocular toxoplasmosisCardozo et al. (2023)
27ToxoFundus(Data Raw 6class All)Ocular toxoplasmosisCardozo et al. (2023)
28Adam datasetAge-related Macular DegenerationLiang (2021)
29APTOS 2019 BlindnessBlindness Level Identification 0 4Karthik et al. (2019)
30DRIMBDQuality Testing of Retinal ImagesPrentasic et al. (2013)
31Glaucoma DetectionGlaucoma ClassificationZhang and Das (2022)
32AIROGSGlaucoma Classificationde Vente et al. (2023)
33ICPR-HEp-2Multi ClassificationQi et al. (2016)
34SICAPv2Cancer Degree ClassificationSilva-RodrĂ­guez et al. (2020)
35Blood Cell ImagesBlood Cell Classificaion (Multi)Mooney (2017)
36BreakHisCell type and beginormagBukun (2019)
37ChaoyangMulti Classification of pathologistsZhu et al.
38HuSHeMSperm Head Morphology ClassificaionShaker (2018)
39Bone Marrow Cell ClassificationBone Marrow Cell ClassificationMatek et al. (2021)
40NCT-CRC-HE-100KMulti ClassificationKather et al. (2018)
41Malignant Lymphoma ClassificationMulti ClassificationOrlov et al. (2010a)
42Histopathologic Cancer DetectionCancer ClassificationCukierski (2018)
43LC25000Multi Classification of Lung and ColonZhu (2022)
44Brain Tumor 17 ClassesMulti ClassificationFeltrin (2022)
45Tumor ClassificationPituitary or Glioma or Meningioma or NotumorNickparvar (2021a)
46Malignant Lymphoma ClassificationMulti Classification of eye diseasesOrlov et al. (2010b)
47Retinal OCT-C8Multi Classification of eye diseasesSubramanian et al. (2022)
48BUSIBreast CancerAl-Dhabyani et al. (2020)
49Digital Knee X-Ray ImagesDegree Classification of KneeGornale and Patravali (2020)
50Bone Fracture Multi-Region X-ray DataFractured ClassificationNickparvar (2021b)
51Fracture detectionFractured ClassificationBatra (2024)
52The vertebrae X-ray imageVertebraeFraiwan et al. (2022)
53Knee Osteoarthritis DatasetKnee Osteoarthritis with severity gradingChen (2018)
54Shenzhen Chest X-Ray SetCOVID19, Classification Dataset.Jaeger et al. (2014)
55Chest X-ray PDCOVID and PneumoniaAsraf and Islam (2021)
56COVID-19 CHEST X-RAY DATABASECOVID and PneumoniaChowdhury et al. (2020)
57COVIDGRCOVID19, ClassificationTabik et al. (2020)
58MIASMulti Classification of BreastMader (2017)
59Tuberculosis Chest X-Ray DatabaseTuberculosisRahman et al. (2020)
60Pediatric Pneumonia Chest X-RayPneumonia ClassificationKermany (2018)

🔼 Table 10 provides detailed information on the 109 medical datasets used in the study. For each dataset, it lists the dataset name, a brief description of its contents (e.g., type of medical images, specific diseases or conditions), and the corresponding citation from the literature where the dataset is originally described. This table is crucial for understanding the breadth and diversity of the data used to train and evaluate the multimodal large language models (MLLMs) in the paper, particularly concerning compositional generalization.

read the captionTable 10: The details of the medical datasets are provided
No.NameDescriptionCitation
61Random Sample of NIH Chest X-Ray DatasetMulti Classificaiton of ChestWang et al. (2017)
62CoronaHack-Chest X-RayPnemonia Classifcition with Virus typePraveen (2019)
63Brain Tumor DatasetTumor ClassificationViradiya (2020)
64Fitzpatrick 17k (Nine Labels)Multi ClassificationGroh et al. (2021)
65BioMediTechMulti ClassificationNanni et al. (2016)
66Diabetic retinopathyDiabetic Retinopathy LevelBenĂ­tez et al. (2021)
67LeukemiaCancer ClassificationCodella et al. (2019)
68ODIR-5KMultiple Labels ClassificationUniversity (2019)
69ArthrosisBone Age ClassificationZha (2021)
70HSA-NRLMulti Classification of pathologistsZhu et al. (2021)
71ISIC 2018 (Task 3)Multi ClassificationCodella et al. (2019)
72ISIC 2017 (Task 3)Multi ClassificationCodella et al. (2018)
73ChestX-DetMulti ClassificationLian et al. (2021)
74Monkeypox Skin Lesion DatasetOnly MonkeypoxAli et al. (2022)
75Cataract DatasetMulti ClassificationJR2NGB (2019)
76ChestX-rays IndianaUniversityMulti-label ClassificationRaddar (2019)
77CheXpert v1.0 smallMulti-label ClassificationArevalo (2020)
78CBIS-DDSMMulti ClassificationLee et al. (2017)
79NLM-TBTuberculosisKaraca (2022)
80ChestXray-NIHCCMulti-label ClassificationSummers and Ronald (2020)
81COVIDx CXR-4COVID19, ClassificationWang et al. (2020)
82VinDr-MammoMulti-label ClassificationNguyen et al. (2023)
83PBC dataset normal DIBMulti ClassificationAcevedo et al. (2020)
84Human Protein AtlasMulti-label Classification (Only green)Le et al. (2022)
85RSNA Pneumonia Detection Challenge 2018Multi-label ClassificationAnouk Stein et al. (2018)
86VinDr-SpineXRMulti Classification of Bones DiseasesPham et al. (2021)
87VinDr-PCXRMulti-label ClassificationPham et al. (2022)
88PH2Melanoma SegmentationMendonca et al. (2015)
89ISBI 2016 (Task3B)Melanoma SegmentationGutman et al. (2016)
90ISIC 2016 (Task 1)Melanoma SegmentationGutman et al. (2016)
91ISIC 2017Melanoma SegmentationCodella et al. (2018)
92CVC-ClinicDBPolyp SegmentationBernal et al. (2015)
93[Kvasir-SEG](https://datasets.simula.no/kvasir-seg/, https://github.com/DebeshJha/2020-MediaEval-Medico-polyp-segmentation/tree/master)Polyp segmentationJha et al. (2020)
94m2caisegSurgical Instrument SegmentationMaqbool et al. (2020)
95EDD 2020Multiple Diseases Segmentation in IntestineAli et al. (2020)
96SICAPv2Cancer Cells SegmentationSilva-RodrĂ­guez et al. (2020)
97BUSICancer SegmentationHesaraki (2022)
98TN3KThyroid Nodule SegmentationGong et al. (2022)
99NLM-TBLung Segmentation (With left or right)Gong et al. (2021)
100VinDr-SpineXRSpinal X-ray Anaomaly DetectionPham et al. (2021)
101VinDr-PCXRMultiple Diseases Segmentation in ChestPham et al. (2022)
102ChestX-DetMultiple Diseases Segmentation in ChestLian et al. (2021)
103UW-Madison Gl Tract Image SegmentationSurgical Instrument SegmentationLee et al. (2024)
104Duke Liver Dataset MRI v1Liver SegmentationMacdonald et al. (2020)
105Duke Liver Dataset MRI v2Liver SegmentationMacdonald et al. (2020)
106SIIM-ACR Pneumothorax SegmentationPneumothorax SegmentationZawacki et al. (2019)
107FIVESFundus Vascular SegmentationJin et al. (2022)
108RIM-ONE DLOptic Disc and Cup SegmentationBatista et al. (2020)
109PALM19Optic Disc SegmentationFu et al. (2019)

🔼 Table 11 provides a continuation of the dataset descriptions started in Table 10. It lists additional medical image datasets used in the study, detailing their names, descriptions of the medical tasks involved (e.g., classification, segmentation, detection), and the citation for each dataset’s source. The table is crucial for understanding the breadth and diversity of data used to evaluate the model’s capabilities and generalization performance.

read the captionTable 11: Continued from Table 10.

Full paper
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